PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7998_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27004.2 Da    PI: 5.279
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7998_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29e-281057249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl+e+
  RrC7998_p1 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLFEF 57
                69*********************************************9 PP

2K-box523.1e-18861632097
       K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 + a+L kei    +++R++ Ge+L+ L+++eLqqLe++Le +l+++  +K+e ++++i++lq+k  +l +enk+Lr++
  RrC7998_p1  86 DNARLSKEIADKSHQLRQMRGEELQGLNIEELQQLEKALEAGLSRVIGTKSEKIMNEISDLQRKGMQLMDENKRLRQQ 163
                 5689999999999***************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-27162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.24161IPR002100Transcription factor, MADS-box
CDDcd002651.74E-33270No hitNo description
PRINTSPR004046.6E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.65880173IPR002487Transcription factor, K-box
PfamPF014862.1E-1786163IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.5.1703.7E-4141180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLFEFLLE  60
RHNLQSKNLE KLDQPSLELQ LVENSDNARL SKEIADKSHQ LRQMRGEELQ GLNIEELQQL  120
EKALEAGLSR VIGTKSEKIM NEISDLQRKG MQLMDENKRL RQQGTQLTEE NERLGEQVSR  180
YYFEHIYNNM HERYGGVESE NTAVYEEGHS SESITNAGNS TGAPVDSESS DTSLRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D4e-16357256MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C4e-16357256MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B4e-16357256MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A4e-16357256MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1tqe_S5e-16157157Myocyte-specific enhancer factor 2B
1tqe_R5e-16157157Myocyte-specific enhancer factor 2B
1tqe_Q5e-16157157Myocyte-specific enhancer factor 2B
1tqe_P5e-16157157Myocyte-specific enhancer factor 2B
3p57_J5e-16357256Myocyte-specific enhancer factor 2A
3p57_I5e-16357256Myocyte-specific enhancer factor 2A
3p57_D5e-16357256Myocyte-specific enhancer factor 2A
3p57_C5e-16357256Myocyte-specific enhancer factor 2A
3p57_B5e-16357256Myocyte-specific enhancer factor 2A
3p57_A5e-16357256Myocyte-specific enhancer factor 2A
3kov_J5e-16357256Myocyte-specific enhancer factor 2A
3kov_I5e-16357256Myocyte-specific enhancer factor 2A
3kov_B5e-16357256Myocyte-specific enhancer factor 2A
3kov_A5e-16357256Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6416751e-166DQ641675.1 Brassica rapa subsp. campestris cultivar Jangmi short vegetative phase protein (SVP) mRNA, complete cds.
GenBankJQ9067161e-166JQ906716.1 Brassica juncea clone SVP-2 MADS-box protein SVP (SVP) mRNA, complete cds.
GenBankJQ9067181e-166JQ906718.1 Brassica napus clone SVP-2 MADS-box protein SVP (SVP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743611.11e-154PREDICTED: MADS-box protein SVP-like isoform X1
SwissprotQ9FVC11e-143SVP_ARATH; MADS-box protein SVP
TrEMBLI6TF571e-152I6TF57_BRANA; MADS-box protein SVP
STRINGBra030228.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-132MIKC_MADS family protein